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US11407721, Example 32

E3L026746
Internal ID: BDB026746
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB026746/BDB026746.sdf
Basic Properties
Compound ID
E3L026746
Internal ID
BDB026746
Molecular formula
C33H33Cl2N3O5
Molecular weight
622.549000
Exact mass
621.179727
XLogP
6.2673
TPSA
119.7300
HBA / HBD
5 / 2
Rotatable bonds
12
Heavy atoms / rings
43 / 4
Activity summary
IC50 unknown 40.00000000 nM
4 activity record(s) imported
InChIKey
IOBJPQJJXSHZBT-HUAAZGBFSA-N
SMILES
CCC[C@H](C(=O)NCCCC(=O)O)N1C(=O)[C@H](Cc2ccc(C#N)cc2)O[C@@H](c2ccc(Cl)cc2)[C@H]1c1ccc(Cl)cc1
Aliases
BDBM562786 (preferred) US11407721, Example 32 (source_name) BDBM562786 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM562786 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM562786 Open - 10.7270/Q20P1378
PubChem CID77108131 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC[C@H](C(=O)NCCCC(=O)O)N1C(=O)[C@H](Cc2ccc(C#N)cc2)O[C@@H](c2ccc(Cl)cc2)[C@H]1c1ccc(Cl)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB026746/BDB026746.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB026746/BDB026746.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB026746/BDB026746.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB026746/BDB026746.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB026746/BDB026746.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM562786 IC50 171 nM Moderate DOI: 10.7270/Q20P1378 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM562786 IC50 40 nM High DOI: 10.7270/Q20P1378 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM562786 IC50 150 nM Moderate DOI: 10.7270/Q20P1378 1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM562786 IC50 199 nM Moderate DOI: 10.7270/Q20P1378 1