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US11420970, Example 30

E3L027215
Internal ID: BDB027215
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027215/BDB027215.sdf
Basic Properties
Compound ID
E3L027215
Internal ID
BDB027215
Molecular formula
C27H30F2N8O
Molecular weight
520.588000
Exact mass
520.251064
XLogP
3.6638
TPSA
121.0000
HBA / HBD
8 / 2
Rotatable bonds
7
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 5.50000000 nM
1 activity record(s) imported
InChIKey
JVKDBWFAAAXKFO-HHHXNRCGSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(COC2CCC2)C1
Aliases
BDBM567829 (preferred) US11420970, Example 30 (source_name) BDBM567829 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM567829 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM567829 Open - 10.7270/Q27084N0
PubChem CID156073303 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(COC2CCC2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027215/BDB027215.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027215/BDB027215.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027215/BDB027215.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027215/BDB027215.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027215/BDB027215.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567829 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1