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US11420970, Example 64

E3L027245
Internal ID: BDB027245
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027245/BDB027245.sdf
Basic Properties
Compound ID
E3L027245
Internal ID
BDB027245
Molecular formula
C27H30BrF2N9O
Molecular weight
614.499000
Exact mass
613.172475
XLogP
4.1952
TPSA
140.8700
HBA / HBD
8 / 3
Rotatable bonds
9
Heavy atoms / rings
40 / 5
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
DVGCCCHBLUDPJV-UHFFFAOYSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc(NC(=O)CCBr)cc2)ncc1N1CCCC(N)(CC(F)F)C1
Aliases
BDBM567863 (preferred) US11420970, Example 64 (source_name) BDBM567863 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2
reported_binder bindingdb_reported Yes No low BindingDB:BDBM567863 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM567863 Open - 10.7270/Q27084N0
PubChem CID156073228 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc(NC(=O)CCBr)cc2)ncc1N1CCCC(N)(CC(F)F)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027245/BDB027245.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027245/BDB027245.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027245/BDB027245.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027245/BDB027245.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027245/BDB027245.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component
BindingDB:BDBM567863 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1