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US11420970, Example 107

E3L027288
Internal ID: BDB027288
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027288/BDB027288.sdf
Basic Properties
Compound ID
E3L027288
Internal ID
BDB027288
Molecular formula
C27H28F2N8O
Molecular weight
518.572000
Exact mass
518.235414
XLogP
3.4639
TPSA
128.8400
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
CKULHZNFESQBFR-UHFFFAOYSA-N
SMILES
CC1(C(=O)C2(N)CCCN(c3cnc(-c4ccc(F)c(F)c4)cc3Cn3cnc4c(N)ncnc43)C2)CC1
Aliases
BDBM567906 (preferred) US11420970, Example 107 (source_name) BDBM567906 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM567906 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM567906 Open - 10.7270/Q27084N0
PubChem CID156073309 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(C(=O)C2(N)CCCN(c3cnc(-c4ccc(F)c(F)c4)cc3Cn3cnc4c(N)ncnc43)C2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027288/BDB027288.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027288/BDB027288.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027288/BDB027288.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027288/BDB027288.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027288/BDB027288.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567906 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1