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NSD2 inhibitor-1

E3L027342
Internal ID: BDB027342
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027342/BDB027342.sdf
Basic Properties
Compound ID
E3L027342
Internal ID
BDB027342
Molecular formula
C25H26F4N8O2
Molecular weight
546.529000
Exact mass
546.211485
XLogP
2.7293
TPSA
141.2300
HBA / HBD
9 / 3
Rotatable bonds
7
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 5.50000000 nM
2 activity record(s) imported
InChIKey
PIFXSVGCYBHXHR-PXDATVDWSA-N
SMILES
COc1cc(F)c(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F
Aliases
BDBM567960 (preferred) NSD2 inhibitor-1 (source_name) BDBM567960 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM567960 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM567960 Open - 10.7270/Q27084N0; 10.7270/Q2MS3ZG4 PMID: 39230932
PubChem CID156069450 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(F)c(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027342/BDB027342.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027342/BDB027342.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027342/BDB027342.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027342/BDB027342.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027342/BDB027342.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567960 IC50 <100 nM High DOI: 10.7270/Q2MS3ZG4
PMID: 39230932 		1
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567960 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1