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US11420970, Example 198

E3L027378
Internal ID: BDB027378
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027378/BDB027378.sdf
Basic Properties
Compound ID
E3L027378
Internal ID
BDB027378
Molecular formula
C27H25F2N9
Molecular weight
513.556000
Exact mass
513.220098
XLogP
3.6464
TPSA
124.6600
HBA / HBD
8 / 2
Rotatable bonds
5
Heavy atoms / rings
38 / 6
Activity summary
IC50 unknown 5.50000000 nM
3 activity record(s) imported
InChIKey
FXAXMDGEXGUYBN-HHHXNRCGSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(c2ccccn2)C1
Aliases
BDBM567996 (preferred) US11420970, Example 198 (source_name) BDBM567996 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM567996 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM567996 Open - 10.7270/Q27084N0; 10.1016/j.ejmech.2023.115232 PMID: 36863225
PubChem CID156073186 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(c2ccccn2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027378/BDB027378.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027378/BDB027378.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027378/BDB027378.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027378/BDB027378.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027378/BDB027378.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567996 IC50 18 nM High DOI: 10.1016/j.ejmech.2023.115232
PMID: 36863225 		1
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567996 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM567996 IC50 41 nM High DOI: 10.1016/j.ejmech.2023.115232
PMID: 36863225 		1