< Back to small molecule database

US11420970, Example 211

E3L027391
Internal ID: BDB027391
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027391/BDB027391.sdf
Basic Properties
Compound ID
E3L027391
Internal ID
BDB027391
Molecular formula
C28H28ClN9O
Molecular weight
542.047000
Exact mass
541.210534
XLogP
4.0302
TPSA
133.8900
HBA / HBD
9 / 2
Rotatable bonds
6
Heavy atoms / rings
39 / 6
Activity summary
IC50 unknown 5.50000000 nM
1 activity record(s) imported
InChIKey
NZFHRTPPWJECFN-MUUNZHRXSA-N
SMILES
COc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)(c4cccc(Cl)n4)C3)cn2)cc1
Aliases
BDBM568009 (preferred) US11420970, Example 211 (source_name) BDBM568009 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568009 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568009 Open - 10.7270/Q27084N0
PubChem CID156073462 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)(c4cccc(Cl)n4)C3)cn2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027391/BDB027391.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027391/BDB027391.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027391/BDB027391.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027391/BDB027391.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027391/BDB027391.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568009 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1