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US11420970, Example 220

E3L027400
Internal ID: BDB027400
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027400/BDB027400.sdf
Basic Properties
Compound ID
E3L027400
Internal ID
BDB027400
Molecular formula
C29H28ClN11
Molecular weight
566.073000
Exact mass
565.221768
XLogP
3.9083
TPSA
142.4800
HBA / HBD
9 / 2
Rotatable bonds
5
Heavy atoms / rings
41 / 7
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
AXZIWLYZTNGOBI-UHFFFAOYSA-N
SMILES
Cn1cnc2ccc(-c3cc(Cn4cnc5c(N)ncnc54)c(N4CCCC(N)(c5cccc(Cl)n5)C4)cn3)cc21
Aliases
BDBM568018 (preferred) US11420970, Example 220 (source_name) BDBM568018 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568018 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568018 Open - 10.7270/Q27084N0
PubChem CID156073284 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cnc2ccc(-c3cc(Cn4cnc5c(N)ncnc54)c(N4CCCC(N)(c5cccc(Cl)n5)C4)cn3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027400/BDB027400.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027400/BDB027400.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027400/BDB027400.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027400/BDB027400.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027400/BDB027400.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568018 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1