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US11420970, Example 222

E3L027402
Internal ID: BDB027402
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027402/BDB027402.sdf
Basic Properties
Compound ID
E3L027402
Internal ID
BDB027402
Molecular formula
C28H26ClN11
Molecular weight
552.046000
Exact mass
551.206118
XLogP
3.6693
TPSA
141.9600
HBA / HBD
9 / 2
Rotatable bonds
5
Heavy atoms / rings
40 / 7
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
UGXYTMHJNBGIRV-UHFFFAOYSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc3ccnn3c2)ncc1N1CCCC(N)(c2cccc(Cl)n2)C1
Aliases
BDBM568020 (preferred) US11420970, Example 222 (source_name) BDBM568020 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568020 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568020 Open - 10.7270/Q27084N0
PubChem CID156073280 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc3ccnn3c2)ncc1N1CCCC(N)(c2cccc(Cl)n2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027402/BDB027402.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027402/BDB027402.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027402/BDB027402.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027402/BDB027402.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027402/BDB027402.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568020 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1