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US11420970, Example 223

E3L027403
Internal ID: BDB027403
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027403/BDB027403.sdf
Basic Properties
Compound ID
E3L027403
Internal ID
BDB027403
Molecular formula
C28H24ClFN10
Molecular weight
555.021000
Exact mass
554.185797
XLogP
4.0324
TPSA
148.4500
HBA / HBD
9 / 2
Rotatable bonds
5
Heavy atoms / rings
40 / 6
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
MUTCLHZIVRNFHH-UHFFFAOYSA-N
SMILES
N#Cc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCCC(N)(c4cccc(Cl)n4)C3)cn2)cc1F
Aliases
BDBM568021 (preferred) US11420970, Example 223 (source_name) BDBM568021 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568021 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568021 Open - 10.7270/Q27084N0
PubChem CID156073277 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCCC(N)(c4cccc(Cl)n4)C3)cn2)cc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027403/BDB027403.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027403/BDB027403.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027403/BDB027403.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027403/BDB027403.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027403/BDB027403.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568021 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1