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US11420970, Example 236

E3L027416
Internal ID: BDB027416
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027416/BDB027416.sdf
Basic Properties
Compound ID
E3L027416
Internal ID
BDB027416
Molecular formula
C28H26ClF2N9O
Molecular weight
578.027000
Exact mass
577.191691
XLogP
4.3084
TPSA
133.8900
HBA / HBD
9 / 2
Rotatable bonds
6
Heavy atoms / rings
41 / 6
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
RKVRSEKGPGXIHK-MUUNZHRXSA-N
SMILES
COc1cc(F)c(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)(c4cccc(Cl)n4)C3)cn2)c(F)c1
Aliases
BDBM568034 (preferred) US11420970, Example 236 (source_name) BDBM568034 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568034 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568034 Open - 10.7270/Q27084N0
PubChem CID156073469 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(F)c(-c2cc(Cn3cnc4c(N)ncnc43)c(N3CCC[C@](N)(c4cccc(Cl)n4)C3)cn2)c(F)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027416/BDB027416.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027416/BDB027416.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027416/BDB027416.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027416/BDB027416.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027416/BDB027416.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568034 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1