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BDBM568070

E3L027450
Internal ID: BDB027450
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027450/BDB027450.sdf
Basic Properties
Compound ID
E3L027450
Internal ID
BDB027450
Molecular formula
C27H25F2N9O
Molecular weight
529.555000
Exact mass
529.215013
XLogP
2.9397
TPSA
144.6300
HBA / HBD
8 / 3
Rotatable bonds
5
Heavy atoms / rings
39 / 6
Activity summary
IC50 unknown 5.50000000 nM
1 activity record(s) imported
InChIKey
SWPIWAAALQIMPE-HHHXNRCGSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(c2ccc[nH]c2=O)C1
Aliases
BDBM568070 (preferred) 3-[(3S)-3-amino-1-[4-[(6-aminopurin-9-yl)methyl]-6-(3,4-difluorophenyl)-3-pyridinyl]piperidin-3-yl]-1H-pyridin-2-one (source_name) BDBM568070 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568070 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568070 Open - 10.7270/Q27084N0
PubChem CID164850507 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCC[C@](N)(c2ccc[nH]c2=O)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027450/BDB027450.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027450/BDB027450.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027450/BDB027450.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027450/BDB027450.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027450/BDB027450.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568070 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1