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US11420970, Example 278

E3L027456
Internal ID: BDB027456
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027456/BDB027456.sdf
Basic Properties
Compound ID
E3L027456
Internal ID
BDB027456
Molecular formula
C28H28F2N10
Molecular weight
542.598000
Exact mass
542.246647
XLogP
3.7828
TPSA
129.5900
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
40 / 7
Activity summary
IC50 unknown 5.50000000 nM
1 activity record(s) imported
InChIKey
FPZSKKMHEFAEFK-UHFFFAOYSA-N
SMILES
Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCCC(N)(c2ccn(C3CC3)n2)C1
Aliases
BDBM568076 (preferred) US11420970, Example 278 (source_name) BDBM568076 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568076 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568076 Open - 10.7270/Q27084N0
PubChem CID156073316 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ncn2Cc1cc(-c2ccc(F)c(F)c2)ncc1N1CCCC(N)(c2ccn(C3CC3)n2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027456/BDB027456.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027456/BDB027456.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027456/BDB027456.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027456/BDB027456.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027456/BDB027456.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568076 IC50 5.5 nM Very high DOI: 10.7270/Q27084N0 1