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US11420970, Example 306

E3L027482
Internal ID: BDB027482
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB027482/BDB027482.sdf
Basic Properties
Compound ID
E3L027482
Internal ID
BDB027482
Molecular formula
C24H26F2N8O
Molecular weight
480.523000
Exact mass
480.219764
XLogP
2.7896
TPSA
121.0000
HBA / HBD
8 / 2
Rotatable bonds
6
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 525.00000000 nM
1 activity record(s) imported
InChIKey
XCNOJYKALJIDBQ-WMLDXEAASA-N
SMILES
COc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3C[C@H](N)C[C@@H](CF)C3)cn2)cc1F
Aliases
BDBM568104 (preferred) US11420970, Example 306 (source_name) BDBM568104 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM568104 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM568104 Open - 10.7270/Q27084N0
PubChem CID156069954 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc(-c2cc(Cn3cnc4c(N)ncnc43)c(N3C[C@H](N)C[C@@H](CF)C3)cn2)cc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027482/BDB027482.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027482/BDB027482.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027482/BDB027482.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027482/BDB027482.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027482/BDB027482.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM568104 IC50 525 nM Moderate DOI: 10.7270/Q27084N0 1