< Back to small molecule database

BDBM575311

E3L027986
Internal ID: BDB027986
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB027986/BDB027986.sdf
Basic Properties
Compound ID
E3L027986
Internal ID
BDB027986
Molecular formula
C14H17N3O3
Molecular weight
275.308000
Exact mass
275.126991
XLogP
0.3621
TPSA
78.5100
HBA / HBD
4 / 2
Rotatable bonds
4
Heavy atoms / rings
20 / 2
Activity summary
Kd unknown 30000.00000000 nM
4 activity record(s) imported
InChIKey
PZVQPQCRWIIDKX-UHFFFAOYSA-N
SMILES
CN(CC(=O)Nc1ccccc1)C1CCC(=O)NC1=O
Aliases
BDBM575311 (preferred) 2-[(2,6-dioxopiperidin-3-yl)-methylamino]-N-phenylacetamide (source_name) BDBM575311 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM575311 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM575311 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM575311 Open - 10.7270/Q2H1357Z; 10.7270/Q20869F6
PubChem CID146573090 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(CC(=O)Nc1ccccc1)C1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB027986/BDB027986.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB027986/BDB027986.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB027986/BDB027986.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB027986/BDB027986.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB027986/BDB027986.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM575311 Kd 30000 nM Low DOI: 10.7270/Q2H1357Z 2 source records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM575311 Kd 30000 nM Low DOI: 10.7270/Q20869F6 2 source records