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BDBM578830

E3L028188
Internal ID: BDB028188
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028188/BDB028188.sdf
Basic Properties
Compound ID
E3L028188
Internal ID
BDB028188
Molecular formula
C16H16N4O
Molecular weight
280.331000
Exact mass
280.132411
XLogP
2.0062
TPSA
84.6600
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
21 / 3
Activity summary
IC50 unknown 10000.00000000 nM
4 activity record(s) imported
InChIKey
UKTZMOSCKBKQPW-UHFFFAOYSA-N
SMILES
CCc1ccc(-c2ccc3c(=O)[nH]nc(CN)c3c2)cn1
Aliases
BDBM578830 (preferred) 4-(aminomethyl)-6-(6-ethyl-3-pyridinyl)-2H-phthalazin-1-one (source_name) BDBM578830 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM578830 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM578830 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151300 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCc1ccc(-c2ccc3c(=O)[nH]nc(CN)c3c2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028188/BDB028188.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028188/BDB028188.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028188/BDB028188.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028188/BDB028188.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028188/BDB028188.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578830 IC50 25000 nM Low DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578830 IC50 25000 nM Low DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578830 IC50 10000 nM Low DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578830 IC50 10000 nM Low DOI: 10.7270/Q2V128N9 1