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BDBM578835

E3L028193
Internal ID: BDB028193
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028193/BDB028193.sdf
Basic Properties
Compound ID
E3L028193
Internal ID
BDB028193
Molecular formula
C15H14N6O
Molecular weight
294.318000
Exact mass
294.122909
XLogP
1.0773
TPSA
113.3800
HBA / HBD
5 / 2
Rotatable bonds
3
Heavy atoms / rings
22 / 3
Activity summary
IC50 unknown 120.00000000 nM
4 activity record(s) imported
InChIKey
ZONRHTLPJTXVER-UHFFFAOYSA-N
SMILES
Cc1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)n1CC#N
Aliases
BDBM578835 (preferred) 2-[5-[4-(aminomethyl)-1-oxo-2H-phthalazin-6-yl]-2-methylimidazol-1-yl]acetonitrile (source_name) BDBM578835 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM578835 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM578835 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156164755 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)n1CC#N keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028193/BDB028193.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028193/BDB028193.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028193/BDB028193.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028193/BDB028193.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028193/BDB028193.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578835 IC50 4870 nM Low DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578835 IC50 120 nM Moderate DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578835 IC50 4870 nM Low DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578835 IC50 120 nM Moderate DOI: 10.7270/Q23F4SWQ 1