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BDBM578865

E3L028223
Internal ID: BDB028223
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028223/BDB028223.sdf
Basic Properties
Compound ID
E3L028223
Internal ID
BDB028223
Molecular formula
C19H15N5O2
Molecular weight
345.362000
Exact mass
345.122575
XLogP
2.6311
TPSA
106.7800
HBA / HBD
6 / 2
Rotatable bonds
4
Heavy atoms / rings
26 / 4
Activity summary
IC50 unknown 58.00000000 nM
4 activity record(s) imported
InChIKey
LQQVYTHMTCNFAN-UHFFFAOYSA-N
SMILES
NCc1n[nH]c(=O)c2ccc(-c3cncc(Oc4ccccn4)c3)cc12
Aliases
BDBM578865 (preferred) 4-(aminomethyl)-6-(5-pyridin-2-yloxy-3-pyridinyl)-2H-phthalazin-1-one (source_name) BDBM578865 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM578865 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM578865 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151720 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NCc1n[nH]c(=O)c2ccc(-c3cncc(Oc4ccccn4)c3)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028223/BDB028223.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028223/BDB028223.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028223/BDB028223.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028223/BDB028223.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028223/BDB028223.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578865 IC50 1380 nM Low DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578865 IC50 58 nM High DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578865 IC50 1380 nM Low DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578865 IC50 58 nM High DOI: 10.7270/Q2V128N9 1