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BDBM578930

E3L028288
Internal ID: BDB028288
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028288/BDB028288.sdf
Basic Properties
Compound ID
E3L028288
Internal ID
BDB028288
Molecular formula
C18H18N4O
Molecular weight
306.369000
Exact mass
306.148061
XLogP
2.6296
TPSA
84.6600
HBA / HBD
4 / 2
Rotatable bonds
3
Heavy atoms / rings
23 / 4
Activity summary
IC50 unknown 150.00000000 nM
4 activity record(s) imported
InChIKey
OTHKHHYQPROUAS-UHFFFAOYSA-N
SMILES
Cc1c(-c2ccc3c(=O)[nH]nc(CN)c3c2)cncc1C1CC1
Aliases
BDBM578930 (preferred) 4-(aminomethyl)-6-(5-cyclopropyl-4-methyl-3-pyridinyl)-2H-phthalazin-1-one (source_name) BDBM578930 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM578930 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM578930 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151328 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(-c2ccc3c(=O)[nH]nc(CN)c3c2)cncc1C1CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028288/BDB028288.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028288/BDB028288.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028288/BDB028288.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028288/BDB028288.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028288/BDB028288.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578930 IC50 150 nM Moderate DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578930 IC50 1730 nM Low DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578930 IC50 1730 nM Low DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM578930 IC50 150 nM Moderate DOI: 10.7270/Q2V128N9 1