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BDBM579033

E3L028386
Internal ID: BDB028386
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028386/BDB028386.sdf
Basic Properties
Compound ID
E3L028386
Internal ID
BDB028386
Molecular formula
C23H23N5O2
Molecular weight
401.470000
Exact mass
401.185175
XLogP
3.3806
TPSA
98.8200
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
30 / 5
Activity summary
IC50 unknown 810.00000000 nM
2 activity record(s) imported
InChIKey
XEYPBBBWODQPNL-UHFFFAOYSA-N
SMILES
Cn1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)c1-c1cccc(OC2CCC2)c1
Aliases
BDBM579033 (preferred) 4-(aminomethyl)-6-[5-(3-cyclobutyloxyphenyl)-1-methylpyrazol-4-yl]-2H-phthalazin-1-one (source_name) BDBM579033 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579033 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579033 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151144 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)c1-c1cccc(OC2CCC2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028386/BDB028386.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028386/BDB028386.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028386/BDB028386.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028386/BDB028386.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028386/BDB028386.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579033 IC50 810 nM Moderate DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579033 IC50 810 nM Moderate DOI: 10.7270/Q23F4SWQ 1