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BDBM579034

E3L028387
Internal ID: BDB028387
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028387/BDB028387.sdf
Basic Properties
Compound ID
E3L028387
Internal ID
BDB028387
Molecular formula
C23H23N5O2
Molecular weight
401.470000
Exact mass
401.185175
XLogP
3.3806
TPSA
98.8200
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
30 / 5
Activity summary
IC50 unknown 354.00000000 nM
2 activity record(s) imported
InChIKey
IUKLPXAFPAKDEF-UHFFFAOYSA-N
SMILES
Cn1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)c1-c1ccc(OC2CCC2)cc1
Aliases
BDBM579034 (preferred) 4-(aminomethyl)-6-[5-(4-cyclobutyloxyphenyl)-1-methylpyrazol-4-yl]-2H-phthalazin-1-one (source_name) BDBM579034 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579034 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579034 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151820 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ncc(-c2ccc3c(=O)[nH]nc(CN)c3c2)c1-c1ccc(OC2CCC2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028387/BDB028387.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028387/BDB028387.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028387/BDB028387.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028387/BDB028387.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028387/BDB028387.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579034 IC50 354 nM Moderate DOI: 10.7270/Q2V128N9 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579034 IC50 354 nM Moderate DOI: 10.7270/Q23F4SWQ 1