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BDBM579067

E3L028419
Internal ID: BDB028419
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028419/BDB028419.sdf
Basic Properties
Compound ID
E3L028419
Internal ID
BDB028419
Molecular formula
C25H20N6O
Molecular weight
420.476000
Exact mass
420.169859
XLogP
3.7826
TPSA
113.3800
HBA / HBD
5 / 2
Rotatable bonds
3
Heavy atoms / rings
32 / 5
Activity summary
IC50 unknown 34.00000000 nM
2 activity record(s) imported
InChIKey
KCYBVBFDBNEAFQ-UHFFFAOYSA-N
SMILES
Cc1cc(-c2cnn(C)c2-c2ccc3ccccc3c2C#N)cc2c(CN)n[nH]c(=O)c12
Aliases
BDBM579067 (preferred) 2-[4-[4-(aminomethyl)-8-methyl-1-oxo-2H-phthalazin-6-yl]-1-methylpyrazol-5-yl]naphthalene-1-carbonitrile (source_name) BDBM579067 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579067 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579067 Open - 10.7270/Q23F4SWQ; 10.7270/Q2V128N9
PubChem CID156151683 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cnn(C)c2-c2ccc3ccccc3c2C#N)cc2c(CN)n[nH]c(=O)c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028419/BDB028419.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028419/BDB028419.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028419/BDB028419.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028419/BDB028419.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028419/BDB028419.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579067 IC50 34 nM High DOI: 10.7270/Q23F4SWQ 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579067 IC50 34 nM High DOI: 10.7270/Q2V128N9 1