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US11485731, Example 1BY

E3L028531
Internal ID: BDB028531
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028531/BDB028531.sdf
Basic Properties
Compound ID
E3L028531
Internal ID
BDB028531
Molecular formula
C23H37N5O2
Molecular weight
415.582000
Exact mass
415.294725
XLogP
0.8270
TPSA
62.2900
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 2650.00000000 nM
1 activity record(s) imported
InChIKey
GFKPRRSHUCBZGS-KEKNWZKVSA-N
SMILES
CN1CCN(C2CCCN(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)C2)CC1
Aliases
BDBM579924 (preferred) US11485731, Example 1BY (source_name) BDBM579924 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579924 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579924 Open - 10.7270/Q2S75M66
PubChem CID142428298 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCN(C2CCCN(C(=O)NC[C@H](O)CN3CCc4ccccc4C3)C2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028531/BDB028531.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028531/BDB028531.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028531/BDB028531.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028531/BDB028531.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028531/BDB028531.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579924 IC50 2650 nM Low DOI: 10.7270/Q2S75M66 1