< Back to small molecule database

US11485731, Example 1CD

E3L028536
Internal ID: BDB028536
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028536/BDB028536.sdf
Basic Properties
Compound ID
E3L028536
Internal ID
BDB028536
Molecular formula
C21H32N4O3
Molecular weight
388.512000
Exact mass
388.247441
XLogP
0.5217
TPSA
68.2800
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 12293.00000000 nM
1 activity record(s) imported
InChIKey
DSGXERYAWRGUGU-ANYOKISRSA-N
SMILES
O=C(NC[C@H](O)CN1CCc2ccccc2C1)N1CCC(N2CCOCC2)C1
Aliases
BDBM579929 (preferred) US11485731, Example 1CD (source_name) BDBM579929 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579929 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579929 Open - 10.7270/Q2S75M66
PubChem CID142428316 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(NC[C@H](O)CN1CCc2ccccc2C1)N1CCC(N2CCOCC2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028536/BDB028536.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028536/BDB028536.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028536/BDB028536.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028536/BDB028536.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028536/BDB028536.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579929 IC50 12293 nM Low DOI: 10.7270/Q2S75M66 1