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US11485731, Example 3B

E3L028551
Internal ID: BDB028551
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028551/BDB028551.sdf
Basic Properties
Compound ID
E3L028551
Internal ID
BDB028551
Molecular formula
C18H26N2O3
Molecular weight
318.417000
Exact mass
318.194343
XLogP
2.0281
TPSA
53.0100
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
23 / 3
Activity summary
IC50 unknown 613.00000000 nM
1 activity record(s) imported
InChIKey
PPYNZNLYEJUPKY-UHFFFAOYSA-N
SMILES
O=C(OCC(O)CN1CCc2ccccc2C1)N1CCCCC1
Aliases
BDBM579944 (preferred) US11485731, Example 3B (source_name) BDBM579944 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579944 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579944 Open - 10.7270/Q2S75M66
PubChem CID142428339 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(OCC(O)CN1CCc2ccccc2C1)N1CCCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028551/BDB028551.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028551/BDB028551.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028551/BDB028551.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028551/BDB028551.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028551/BDB028551.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579944 IC50 613 nM Moderate DOI: 10.7270/Q2S75M66 1