< Back to small molecule database

US11485731, Example 4L

E3L028565
Internal ID: BDB028565
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028565/BDB028565.sdf
Basic Properties
Compound ID
E3L028565
Internal ID
BDB028565
Molecular formula
C23H28N2O3
Molecular weight
380.488000
Exact mass
380.209993
XLogP
3.0317
TPSA
53.0100
HBA / HBD
4 / 1
Rotatable bonds
5
Heavy atoms / rings
28 / 4
Activity summary
IC50 unknown 13.00000000 nM
1 activity record(s) imported
InChIKey
LUVXBZDRGFIAKS-FCHUYYIVSA-N
SMILES
O=C(OC[C@H](O)CN1CCc2ccccc2C1)N1CC[C@H](c2ccccc2)C1
Aliases
BDBM579958 (preferred) US11485731, Example 4L (source_name) BDBM579958 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579958 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579958 Open - 10.7270/Q2S75M66
PubChem CID148417126 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(OC[C@H](O)CN1CCc2ccccc2C1)N1CC[C@H](c2ccccc2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028565/BDB028565.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028565/BDB028565.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028565/BDB028565.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028565/BDB028565.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028565/BDB028565.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579958 IC50 13 nM High DOI: 10.7270/Q2S75M66 1