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US11485731, Example 4AB

E3L028581
Internal ID: BDB028581
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB028581/BDB028581.sdf
Basic Properties
Compound ID
E3L028581
Internal ID
BDB028581
Molecular formula
C20H24N2O3S
Molecular weight
372.490000
Exact mass
372.150764
XLogP
2.6620
TPSA
53.0100
HBA / HBD
5 / 1
Rotatable bonds
4
Heavy atoms / rings
26 / 4
Activity summary
IC50 unknown 1011.00000000 nM
1 activity record(s) imported
InChIKey
GVAOBCHNPLMKKK-UHFFFAOYSA-N
SMILES
O=C(OCC(O)CN1CCc2ccsc2C1)N1CCc2ccccc2C1
Aliases
BDBM579974 (preferred) US11485731, Example 4AB (source_name) BDBM579974 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM579974 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM579974 Open - 10.7270/Q2S75M66
PubChem CID142428225 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(OCC(O)CN1CCc2ccsc2C1)N1CCc2ccccc2C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB028581/BDB028581.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB028581/BDB028581.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB028581/BDB028581.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB028581/BDB028581.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB028581/BDB028581.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM579974 IC50 1011 nM Low DOI: 10.7270/Q2S75M66 1