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BDBM582236

E3L029016
Internal ID: BDB029016
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB029016/BDB029016.sdf
Basic Properties
Compound ID
E3L029016
Internal ID
BDB029016
Molecular formula
C28H27Cl2N7O5
Molecular weight
612.474000
Exact mass
611.145072
XLogP
3.3063
TPSA
157.6000
HBA / HBD
8 / 3
Rotatable bonds
6
Heavy atoms / rings
42 / 6
Activity summary
Kd unknown 20.00000000 nM
1 activity record(s) imported
InChIKey
WRVBYMYIGSAAJN-UHFFFAOYSA-N
SMILES
Cn1cnc2c(c(-c3cc(Cl)c(O)c(C(N)=O)c3)cn2CC(=O)Nc2cc(N3CCOCC34CCC4)ncc2Cl)c1=O
Aliases
BDBM582236 (preferred) 3-Chloro-5-[7-[2-[[5-chloro-2-(8-oxa-5-azaspiro[3.5]nonan-5-yl)-4-pyridinyl]amino]-2-oxoethyl]-3-methyl-4-oxopyrrolo[2,3-d]pyrimidin-5-yl]-2-hydroxybenzamide (source_name) BDBM582236 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM582236 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM582236 Open - 10.7270/Q22B92WK
PubChem CID139405331 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cnc2c(c(-c3cc(Cl)c(O)c(C(N)=O)c3)cn2CC(=O)Nc2cc(N3CCOCC34CCC4)ncc2Cl)c1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029016/BDB029016.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029016/BDB029016.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029016/BDB029016.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029016/BDB029016.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029016/BDB029016.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM582236 Kd 20 nM High DOI: 10.7270/Q22B92WK 1