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BDBM582279

E3L029057
Internal ID: BDB029057
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB029057/BDB029057.sdf
Basic Properties
Compound ID
E3L029057
Internal ID
BDB029057
Molecular formula
C23H21ClFN7O4
Molecular weight
513.917000
Exact mass
513.132758
XLogP
2.0987
TPSA
148.3700
HBA / HBD
7 / 3
Rotatable bonds
6
Heavy atoms / rings
36 / 4
Activity summary
Kd unknown 9.47000000 nM
1 activity record(s) imported
InChIKey
VYSWQVKGCVJATR-UHFFFAOYSA-N
SMILES
CN(C)c1cc(NC(=O)Cn2cc(-c3cc(F)c(O)c(C(N)=O)c3)c3c(=O)n(C)cnc32)c(Cl)cn1
Aliases
BDBM582279 (preferred) 5-[7-[2-[[5-Chloro-2-(dimethylamino)-4-pyridinyl]amino]-2-oxoethyl]-3-methyl-4-oxopyrrolo[2,3-d]pyrimidin-5-yl]-3-fluoro-2-hydroxybenzamide (source_name) BDBM582279 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM582279 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM582279 Open - 10.7270/Q22B92WK
PubChem CID155222457 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)c1cc(NC(=O)Cn2cc(-c3cc(F)c(O)c(C(N)=O)c3)c3c(=O)n(C)cnc32)c(Cl)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029057/BDB029057.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029057/BDB029057.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029057/BDB029057.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029057/BDB029057.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029057/BDB029057.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM582279 Kd 9.47 nM Very high DOI: 10.7270/Q22B92WK 1