< Back to small molecule database

BDBM582336

E3L029111
Internal ID: BDB029111
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB029111/BDB029111.sdf
Basic Properties
Compound ID
E3L029111
Internal ID
BDB029111
Molecular formula
C27H26ClFN8O6
Molecular weight
613.006000
Exact mass
612.164786
XLogP
1.5595
TPSA
178.8600
HBA / HBD
10 / 4
Rotatable bonds
6
Heavy atoms / rings
43 / 6
Activity summary
Kd unknown 3.29000000 nM
1 activity record(s) imported
InChIKey
WEQFBEFCAAHPBS-LBPRGKRZSA-N
SMILES
C[C@H]1CNCCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c4c3OCO4)c3c(=O)n(C)cnc32)c(Cl)c(F)n1
Aliases
BDBM582336 (preferred) BDBM582336 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM582336 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM582336 Open - 10.7270/Q22B92WK
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1CNCCN1c1cc(NC(=O)Cn2cc(-c3cc(C(N)=O)c(O)c4c3OCO4)c3c(=O)n(C)cnc32)c(Cl)c(F)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029111/BDB029111.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029111/BDB029111.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029111/BDB029111.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029111/BDB029111.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029111/BDB029111.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM582336 Kd 3.29 nM Very high DOI: 10.7270/Q22B92WK 1