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US11524962, Example 11

E3L029259
Internal ID: BDB029259
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB029259/BDB029259.sdf
Basic Properties
Compound ID
E3L029259
Internal ID
BDB029259
Molecular formula
C20H21N3O4
Molecular weight
367.405000
Exact mass
367.153206
XLogP
1.1911
TPSA
100.6300
HBA / HBD
6 / 3
Rotatable bonds
3
Heavy atoms / rings
27 / 5
Activity summary
IC50 unknown 3.00000000 nM
3 activity record(s) imported
InChIKey
GIVBMSCEMGCGQJ-KWXDATOUSA-N
SMILES
Cc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc3c(c2)CC3)[C@@H](O)[C@H]1O
Aliases
BDBM584225 (preferred) US11524962, Example 11 (source_name) BDBM584225 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM584225 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM584225 Open - 10.7270/Q2N58R7H
PubChem CID142575022 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc3c(c2)CC3)[C@@H](O)[C@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029259/BDB029259.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029259/BDB029259.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029259/BDB029259.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029259/BDB029259.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029259/BDB029259.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM584225 IC50 3 nM Very high DOI: 10.7270/Q2N58R7H 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM584225 IC50 6.8 nM Very high DOI: 10.7270/Q2N58R7H 1
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM584225 IC50 24 nM High DOI: 10.7270/Q2N58R7H 1