< Back to small molecule database

US11524962, Example 41

E3L029271
Internal ID: BDB029271
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB029271/BDB029271.sdf
Basic Properties
Compound ID
E3L029271
Internal ID
BDB029271
Molecular formula
C22H25N3O4
Molecular weight
395.459000
Exact mass
395.184506
XLogP
2.0061
TPSA
100.6300
HBA / HBD
6 / 3
Rotatable bonds
4
Heavy atoms / rings
29 / 5
Activity summary
IC50 unknown 230.00000000 nM
1 activity record(s) imported
InChIKey
KRALCMTVPPDMPC-AIYVTKCESA-N
SMILES
CC(C)c1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc3c(c2)CC3)[C@@H](O)[C@H]1O
Aliases
BDBM584237 (preferred) US11524962, Example 41 (source_name) BDBM584237 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM584237 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM584237 Open - 10.7270/Q2N58R7H
PubChem CID142574968 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccc3c(c2)CC3)[C@@H](O)[C@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029271/BDB029271.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029271/BDB029271.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029271/BDB029271.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029271/BDB029271.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029271/BDB029271.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM584237 IC50 230 nM Moderate DOI: 10.7270/Q2N58R7H 1