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BDBM588303

E3L029376
Internal ID: BDB029376
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029376/BDB029376.sdf
Basic Properties
Compound ID
E3L029376
Internal ID
BDB029376
Molecular formula
C19H19N3O2
Molecular weight
321.380000
Exact mass
321.147727
XLogP
1.8936
TPSA
61.4400
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
24 / 4
Activity summary
IC50 > 300000.00000000 nM
1 activity record(s) imported
InChIKey
JOBMNZBVXDSYPW-UHFFFAOYSA-N
SMILES
O=C1Cc2ccc(-c3ccc(C(=O)N4CCNCC4)cc3)cc2N1
Aliases
BDBM588303 (preferred) 6-[4-(Piperazine-1-carbonyl)phenyl]-1,3-dihydroindol-2-one (source_name) BDBM588303 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM588303 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM588303 Open - 10.7270/Q2H41W8C
PubChem CID156194156 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1Cc2ccc(-c3ccc(C(=O)N4CCNCC4)cc3)cc2N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029376/BDB029376.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029376/BDB029376.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029376/BDB029376.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029376/BDB029376.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029376/BDB029376.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM588303 IC50 >300000 nM Low DOI: 10.7270/Q2H41W8C 1