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5-(6-Amino-3-pyridinyl)-1,3-dihydroindol-2-one

E3L029397
Internal ID: BDB029397
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029397/BDB029397.sdf
Basic Properties
Compound ID
E3L029397
Internal ID
BDB029397
Molecular formula
C13H11N3O
Molecular weight
225.251000
Exact mass
225.090212
XLogP
1.8254
TPSA
68.0100
HBA / HBD
3 / 2
Rotatable bonds
1
Heavy atoms / rings
17 / 3
Activity summary
IC50 > 300000.00000000 nM
1 activity record(s) imported
InChIKey
NMOVEYFDNXGIBA-UHFFFAOYSA-N
SMILES
Nc1ccc(-c2ccc3c(c2)CC(=O)N3)cn1
Aliases
BDBM588325 (preferred) 5-(6-Amino-3-pyridinyl)-1,3-dihydroindol-2-one (source_name) BDBM588325 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM588325 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM588325 Open - 10.7270/Q2H41W8C
PubChem CID156220959 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ccc(-c2ccc3c(c2)CC(=O)N3)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029397/BDB029397.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029397/BDB029397.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029397/BDB029397.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029397/BDB029397.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029397/BDB029397.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM588325 IC50 >300000 nM Low DOI: 10.7270/Q2H41W8C 1