< Back to small molecule database

6-(6-Piperidin-1-yl-3-pyridinyl)-1,3-dihydroindol-2-one

E3L029418
Internal ID: BDB029418
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029418/BDB029418.sdf
Basic Properties
Compound ID
E3L029418
Internal ID
BDB029418
Molecular formula
C18H19N3O
Molecular weight
293.370000
Exact mass
293.152812
XLogP
3.2335
TPSA
45.2300
HBA / HBD
3 / 1
Rotatable bonds
2
Heavy atoms / rings
22 / 4
Activity summary
IC50 > 300000.00000000 nM
1 activity record(s) imported
InChIKey
YTKUBWZWARKBGJ-UHFFFAOYSA-N
SMILES
O=C1Cc2ccc(-c3ccc(N4CCCCC4)nc3)cc2N1
Aliases
BDBM588347 (preferred) 6-(6-Piperidin-1-yl-3-pyridinyl)-1,3-dihydroindol-2-one (source_name) BDBM588347 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM588347 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM588347 Open - 10.7270/Q2H41W8C
PubChem CID156194228 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1Cc2ccc(-c3ccc(N4CCCCC4)nc3)cc2N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029418/BDB029418.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029418/BDB029418.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029418/BDB029418.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029418/BDB029418.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029418/BDB029418.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM588347 IC50 >300000 nM Low DOI: 10.7270/Q2H41W8C 1