< Back to small molecule database

US11584748, Example 12

E3L029473
Internal ID: BDB029473
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029473/BDB029473.sdf
Basic Properties
Compound ID
E3L029473
Internal ID
BDB029473
Molecular formula
C15H15N3O2S
Molecular weight
301.371000
Exact mass
301.088498
XLogP
1.9294
TPSA
62.3000
HBA / HBD
5 / 1
Rotatable bonds
1
Heavy atoms / rings
21 / 4
Activity summary
Kd unknown 1.00000000 nM
1 activity record(s) imported
InChIKey
YVQKTFGXZGHQOQ-UHFFFAOYSA-N
SMILES
O=C1CCC2(CCN(c3nc4ccccc4s3)C2)C(=O)N1
Aliases
BDBM594645 (preferred) US11584748, Example 12 (source_name) BDBM594645 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594645 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594645 Open - 10.7270/Q2TH8RMF
PubChem CID146198274 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC2(CCN(c3nc4ccccc4s3)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029473/BDB029473.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029473/BDB029473.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029473/BDB029473.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029473/BDB029473.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029473/BDB029473.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594645 Kd 1 nM Very high DOI: 10.7270/Q2TH8RMF 1