< Back to small molecule database

US11584748, Example 27

E3L029488
Internal ID: BDB029488
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029488/BDB029488.sdf
Basic Properties
Compound ID
E3L029488
Internal ID
BDB029488
Molecular formula
C17H17N3O4
Molecular weight
327.340000
Exact mass
327.121906
XLogP
0.4501
TPSA
95.5800
HBA / HBD
4 / 2
Rotatable bonds
1
Heavy atoms / rings
24 / 4
Activity summary
Kd unknown 47.00000000 nM
1 activity record(s) imported
InChIKey
YAQOLPJWAQESJG-UHFFFAOYSA-N
SMILES
O=C1CCC2(CCN(C(=O)c3cccc4c3CC(=O)N4)C2)C(=O)N1
Aliases
BDBM594660 (preferred) US11584748, Example 27 (source_name) BDBM594660 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594660 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594660 Open - 10.7270/Q2TH8RMF
PubChem CID146198233 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC2(CCN(C(=O)c3cccc4c3CC(=O)N4)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029488/BDB029488.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029488/BDB029488.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029488/BDB029488.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029488/BDB029488.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029488/BDB029488.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594660 Kd 47 nM High DOI: 10.7270/Q2TH8RMF 1