< Back to small molecule database

US11584748, Example 28

E3L029489
Internal ID: BDB029489
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029489/BDB029489.sdf
Basic Properties
Compound ID
E3L029489
Internal ID
BDB029489
Molecular formula
C17H18N2O5
Molecular weight
330.340000
Exact mass
330.121572
XLogP
0.7421
TPSA
92.7800
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
24 / 3
Activity summary
Kd unknown 13.00000000 nM
1 activity record(s) imported
InChIKey
JLAZTIKMMJQORM-UHFFFAOYSA-N
SMILES
COC(=O)c1ccc(C(=O)N2CCC3(CCC(=O)NC3=O)C2)cc1
Aliases
BDBM594661 (preferred) US11584748, Example 28 (source_name) BDBM594661 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594661 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594661 Open - 10.7270/Q2TH8RMF
PubChem CID146198242 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)c1ccc(C(=O)N2CCC3(CCC(=O)NC3=O)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029489/BDB029489.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029489/BDB029489.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029489/BDB029489.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029489/BDB029489.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029489/BDB029489.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594661 Kd 13 nM High DOI: 10.7270/Q2TH8RMF 1