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US11584748, Example 9

E3L029495
Internal ID: BDB029495
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029495/BDB029495.sdf
Basic Properties
Compound ID
E3L029495
Internal ID
BDB029495
Molecular formula
C15H15N5O4
Molecular weight
329.316000
Exact mass
329.112404
XLogP
1.1042
TPSA
121.2300
HBA / HBD
6 / 2
Rotatable bonds
2
Heavy atoms / rings
24 / 4
Activity summary
Kd unknown 5.00000000 nM
1 activity record(s) imported
InChIKey
SRCDARZMFSKPJI-UHFFFAOYSA-N
SMILES
O=C1CCC2(CCN(c3nc4cc([N+](=O)[O-])ccc4[nH]3)C2)C(=O)N1
Aliases
BDBM594667 (preferred) US11584748, Example 9 (source_name) BDBM594667 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594667 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594667 Open - 10.7270/Q2TH8RMF
PubChem CID146198296 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC2(CCN(c3nc4cc([N+](=O)[O-])ccc4[nH]3)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029495/BDB029495.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029495/BDB029495.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029495/BDB029495.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029495/BDB029495.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029495/BDB029495.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594667 Kd 5 nM Very high DOI: 10.7270/Q2TH8RMF 1