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US11584748, Example 37

E3L029498
Internal ID: BDB029498
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029498/BDB029498.sdf
Basic Properties
Compound ID
E3L029498
Internal ID
BDB029498
Molecular formula
C17H19N3O4
Molecular weight
329.356000
Exact mass
329.137556
XLogP
0.9139
TPSA
95.5800
HBA / HBD
4 / 2
Rotatable bonds
2
Heavy atoms / rings
24 / 3
Activity summary
Kd unknown 6.00000000 nM
1 activity record(s) imported
InChIKey
BUGYAESNXFRINL-UHFFFAOYSA-N
SMILES
CC(=O)Nc1cccc(C(=O)N2CCC3(CCC(=O)NC3=O)C2)c1
Aliases
BDBM594670 (preferred) US11584748, Example 37 (source_name) BDBM594670 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594670 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594670 Open - 10.7270/Q2TH8RMF
PubChem CID146198324 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)Nc1cccc(C(=O)N2CCC3(CCC(=O)NC3=O)C2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029498/BDB029498.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029498/BDB029498.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029498/BDB029498.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029498/BDB029498.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029498/BDB029498.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594670 Kd 6 nM Very high DOI: 10.7270/Q2TH8RMF 1