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US11584748, Example 39

E3L029500
Internal ID: BDB029500
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029500/BDB029500.sdf
Basic Properties
Compound ID
E3L029500
Internal ID
BDB029500
Molecular formula
C13H16N4O2
Molecular weight
260.297000
Exact mass
260.127326
XLogP
0.2969
TPSA
88.3200
HBA / HBD
5 / 2
Rotatable bonds
1
Heavy atoms / rings
19 / 3
Activity summary
Kd < 1.00000000 nM
1 activity record(s) imported
InChIKey
NBEUANPPZRTEPM-UHFFFAOYSA-N
SMILES
Nc1ccc(N2CCC3(CCC(=O)NC3=O)C2)nc1
Aliases
BDBM594672 (preferred) US11584748, Example 39 (source_name) BDBM594672 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594672 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594672 Open - 10.7270/Q2TH8RMF
PubChem CID146198269 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ccc(N2CCC3(CCC(=O)NC3=O)C2)nc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029500/BDB029500.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029500/BDB029500.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029500/BDB029500.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029500/BDB029500.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029500/BDB029500.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594672 Kd <1 nM Very high DOI: 10.7270/Q2TH8RMF 1