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US11584748, Example 42

E3L029503
Internal ID: BDB029503
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029503/BDB029503.sdf
Basic Properties
Compound ID
E3L029503
Internal ID
BDB029503
Molecular formula
C19H21N3O4
Molecular weight
355.394000
Exact mass
355.153206
XLogP
0.8645
TPSA
86.7900
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
26 / 4
Activity summary
Kd unknown 8.00000000 nM
1 activity record(s) imported
InChIKey
RXIXLYAWKJONSZ-UHFFFAOYSA-N
SMILES
CC(=O)N1CCc2ccc(C(=O)N3CCC4(CCC(=O)NC4=O)C3)cc21
Aliases
BDBM594675 (preferred) US11584748, Example 42 (source_name) BDBM594675 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594675 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594675 Open - 10.7270/Q2TH8RMF
PubChem CID146198275 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N1CCc2ccc(C(=O)N3CCC4(CCC(=O)NC4=O)C3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029503/BDB029503.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029503/BDB029503.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029503/BDB029503.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029503/BDB029503.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029503/BDB029503.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594675 Kd 8 nM Very high DOI: 10.7270/Q2TH8RMF 1