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US11584748, Example 51

E3L029512
Internal ID: BDB029512
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029512/BDB029512.sdf
Basic Properties
Compound ID
E3L029512
Internal ID
BDB029512
Molecular formula
C18H18N4O4S
Molecular weight
386.433000
Exact mass
386.104876
XLogP
1.5236
TPSA
108.4700
HBA / HBD
6 / 2
Rotatable bonds
2
Heavy atoms / rings
27 / 4
Activity summary
Kd unknown 94.00000000 nM
1 activity record(s) imported
InChIKey
FDUBYROGCOUTID-UHFFFAOYSA-N
SMILES
CC(=O)Nc1nc2ccc(C(=O)N3CCC4(CCC(=O)NC4=O)C3)cc2s1
Aliases
BDBM594684 (preferred) US11584748, Example 51 (source_name) BDBM594684 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594684 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594684 Open - 10.7270/Q2TH8RMF
PubChem CID155790236 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)Nc1nc2ccc(C(=O)N3CCC4(CCC(=O)NC4=O)C3)cc2s1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029512/BDB029512.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029512/BDB029512.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029512/BDB029512.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029512/BDB029512.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029512/BDB029512.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594684 Kd 94 nM High DOI: 10.7270/Q2TH8RMF 1