< Back to small molecule database

US11584748, Example 58

E3L029518
Internal ID: BDB029518
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029518/BDB029518.sdf
Basic Properties
Compound ID
E3L029518
Internal ID
BDB029518
Molecular formula
C18H21N3O3
Molecular weight
327.384000
Exact mass
327.158292
XLogP
1.3071
TPSA
78.5100
HBA / HBD
3 / 2
Rotatable bonds
1
Heavy atoms / rings
24 / 4
Activity summary
Kd unknown 4.00000000 nM
1 activity record(s) imported
InChIKey
AQBJULSTCREMNI-AWEZNQCLSA-N
SMILES
O=C1NC(=O)C2(CCN(C(=O)[C@H]3CCCc4ccccc43)CC2)N1
Aliases
BDBM594691 (preferred) US11584748, Example 58 (source_name) BDBM594691 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594691 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594691 Open - 10.7270/Q2TH8RMF
PubChem CID93988802 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(=O)C2(CCN(C(=O)[C@H]3CCCc4ccccc43)CC2)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029518/BDB029518.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029518/BDB029518.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029518/BDB029518.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029518/BDB029518.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029518/BDB029518.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594691 Kd 4 nM Very high DOI: 10.7270/Q2TH8RMF 1