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US11584748, Example 62

E3L029522
Internal ID: BDB029522
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB029522/BDB029522.sdf
Basic Properties
Compound ID
E3L029522
Internal ID
BDB029522
Molecular formula
C13H13N5O2S
Molecular weight
303.347000
Exact mass
303.078996
XLogP
0.8697
TPSA
87.2200
HBA / HBD
6 / 2
Rotatable bonds
1
Heavy atoms / rings
21 / 4
Activity summary
Kd unknown 17.00000000 nM
1 activity record(s) imported
InChIKey
ZGJOBRAKUMWREZ-UHFFFAOYSA-N
SMILES
O=C1NC(=O)C2(CCN(c3nc4ncccc4s3)CC2)N1
Aliases
BDBM594695 (preferred) US11584748, Example 62 (source_name) BDBM594695 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM594695 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM594695 Open - 10.7270/Q2TH8RMF
PubChem CID146189668 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NC(=O)C2(CCN(c3nc4ncccc4s3)CC2)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029522/BDB029522.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029522/BDB029522.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029522/BDB029522.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029522/BDB029522.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029522/BDB029522.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM594695 Kd 17 nM High DOI: 10.7270/Q2TH8RMF 1