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BDBM595635

E3L029596
Internal ID: BDB029596
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB029596/BDB029596.sdf
Basic Properties
Compound ID
E3L029596
Internal ID
BDB029596
Molecular formula
C26H32N4O4
Molecular weight
464.566000
Exact mass
464.242356
XLogP
1.5830
TPSA
85.3500
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
34 / 5
Activity summary
IC50 unknown 52.00000000 nM
1 activity record(s) imported
InChIKey
QPYMAYBGTFVKFM-FOIFJWKZSA-N
SMILES
CN1CC(Nc2ccc3c(c2)C(=O)N(C[C@H](O)CN2CCc4ccccc4C2)CCO3)CC1=O
Aliases
BDBM595635 (preferred) 4-[(2R)-3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]-7-[(1-methyl-5-oxopyrrolidin-3-yl)amino]-2,3-dihydro-1,4-benzoxazepin-5-one (source_name) BDBM595635 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM595635 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM595635 Open - 10.7270/Q28K7F1F
PubChem CID139468050 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CC(Nc2ccc3c(c2)C(=O)N(C[C@H](O)CN2CCc4ccccc4C2)CCO3)CC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029596/BDB029596.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029596/BDB029596.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029596/BDB029596.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029596/BDB029596.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029596/BDB029596.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM595635 IC50 52 nM High DOI: 10.7270/Q28K7F1F 1