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BDBM595638

E3L029599
Internal ID: BDB029599
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB029599/BDB029599.sdf
Basic Properties
Compound ID
E3L029599
Internal ID
BDB029599
Molecular formula
C28H35FN4O4
Molecular weight
510.610000
Exact mass
510.264234
XLogP
2.5023
TPSA
85.3500
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 138.00000000 nM
1 activity record(s) imported
InChIKey
DYNYVQSJHRTNNY-UHFFFAOYSA-N
SMILES
CC(=O)N1CCC(Nc2ccc3c(c2F)C(=O)N(CC(O)CN2CCc4ccccc4C2)CCO3)CC1
Aliases
BDBM595638 (preferred) 7-[(1-acetylpiperidin-4-yl)amino]-4-[3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]-6-fluoro-2,3-dihydro-1,4-benzoxazepin-5-one (source_name) BDBM595638 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM595638 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM595638 Open - 10.7270/Q28K7F1F
PubChem CID139468005 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N1CCC(Nc2ccc3c(c2F)C(=O)N(CC(O)CN2CCc4ccccc4C2)CCO3)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029599/BDB029599.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029599/BDB029599.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029599/BDB029599.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029599/BDB029599.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029599/BDB029599.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM595638 IC50 138 nM Moderate DOI: 10.7270/Q28K7F1F 1