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BDBM595801

E3L029709
Internal ID: BDB029709
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB029709/BDB029709.sdf
Basic Properties
Compound ID
E3L029709
Internal ID
BDB029709
Molecular formula
C20H21ClN6O2
Molecular weight
412.881000
Exact mass
412.141452
XLogP
1.6533
TPSA
94.2200
HBA / HBD
6 / 2
Rotatable bonds
4
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 6.20000000 nM
1 activity record(s) imported
InChIKey
PVYXHZJKOHRFLR-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc(N2CCN(Cc3cnc4cc(Cl)c(=O)[nH]c4c3)CC2)cn1
Aliases
BDBM595801 (preferred) 5-[4-[(7-chloro-6-oxo-5H-1,5-naphthyridin-3-yl)methyl]piperazin-1-yl]-N-methylpyridine-2-carboxamide (source_name) BDBM595801 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM595801 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM595801 Open - 10.7270/Q2W95F3D
PubChem CID166021812 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc(N2CCN(Cc3cnc4cc(Cl)c(=O)[nH]c4c3)CC2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB029709/BDB029709.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB029709/BDB029709.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB029709/BDB029709.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB029709/BDB029709.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB029709/BDB029709.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM595801 IC50 6.2 nM Very high DOI: 10.7270/Q2W95F3D 1