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US20230287003, Example 5b

E3L030758
Internal ID: BDB030758
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB030758/BDB030758.sdf
Basic Properties
Compound ID
E3L030758
Internal ID
BDB030758
Molecular formula
C24H23ClF3N7O3
Molecular weight
549.941000
Exact mass
549.150300
XLogP
4.5295
TPSA
108.1200
HBA / HBD
8 / 2
Rotatable bonds
5
Heavy atoms / rings
38 / 5
Activity summary
IC50 unknown 813.00000000 nM
1 activity record(s) imported
InChIKey
LFUMMXUIWDXRKJ-UHFFFAOYSA-N
SMILES
COCC1(C)CCOc2c(c3cc(Nc4nc(-n5ccc(C(F)(F)F)n5)ncc4Cl)ccc3n(C)c2=O)N1
Aliases
BDBM618509 (preferred) US20230287003, Example 5b (source_name) BDBM618509 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein
reported_binder bindingdb_reported Yes No low BindingDB:BDBM618509 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM618509 Open - 10.7270/Q2RJ4PKC
PubChem CID155758468 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COCC1(C)CCOc2c(c3cc(Nc4nc(-n5ccc(C(F)(F)F)n5)ncc4Cl)ccc3n(C)c2=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB030758/BDB030758.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB030758/BDB030758.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB030758/BDB030758.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB030758/BDB030758.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB030758/BDB030758.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component
BindingDB:BDBM618509 IC50 813 nM Moderate DOI: 10.7270/Q2RJ4PKC 1