< Back to small molecule database

US20230287003, Example 8b

E3L030782
Internal ID: BDB030782
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB030782/BDB030782.sdf
Basic Properties
Compound ID
E3L030782
Internal ID
BDB030782
Molecular formula
C25H27ClN6O3
Molecular weight
494.983000
Exact mass
494.183316
XLogP
4.2176
TPSA
101.3800
HBA / HBD
8 / 2
Rotatable bonds
3
Heavy atoms / rings
35 / 6
Activity summary
IC50 unknown 141.00000000 nM
1 activity record(s) imported
InChIKey
IGPHVZZJDJWZSD-JEYLPNPQSA-N
SMILES
C[C@H]1COC(=O)c2c(c3cc(Nc4nc(N5C6CCCC5CC6)ncc4Cl)ccc3n(C)c2=O)N1
Aliases
BDBM618535 (preferred) US20230287003, Example 8b (source_name) BDBM618535 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM618535 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM618535 Open - 10.7270/Q2RJ4PKC
PubChem CID155758462 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H]1COC(=O)c2c(c3cc(Nc4nc(N5C6CCCC5CC6)ncc4Cl)ccc3n(C)c2=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB030782/BDB030782.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB030782/BDB030782.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB030782/BDB030782.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB030782/BDB030782.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB030782/BDB030782.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM618535 IC50 141 nM Moderate DOI: 10.7270/Q2RJ4PKC 1